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Department of Anthropology

Research Staff

Dr Adetayo Kasim, BSc, MSc, PhD, CStat

Contact Dr Adetayo Kasim

Academic Qualifications

Professional Memberships

  • Fellow of the Royal Statistical Society (Chattered Statistician) 
  • Member of the International Biometric Society 
  • Member of the Belgian Statistical Society

Selected Conferences/Workshops

  • Invited Session Speaker at Joint Statistical Meeting. Title: Integrated analysis based on cluster analysis of differential expression. August 2016. 
  • Invited Lecturer at the University of Gondar, Ethiopia. Topic: Applied logistic regression. March 2015. 
  • Invited Speaker at DoReMi Workshop. Title: Data Integration in early drug development studies. Barcelona, Spain. October, 2015. 
  • Invited Speaker on ‘Computational methods aiding early-stage drug design’, Dagstuhl Seminar, Germany. Title: Semi-supervised investigation of association of gene expression with structural finger prints. May 2013. 
  • Invited Speaker at IBS-UG workshop on ‘infectious disease’, Uganda. Title. Analysis of HIV data. October 2013. 
  • Invited Session Speaker at International Biometric Society, Kobe, Japan. Title: Informative or non-informative calls for gene expression. August 2012. 
  • Invited Speaker at QSTAR meetings by Janssen Pharmaceutical, Belgium. Title: weighted-similarity based clustering of chemical structure and bioactivity in early drug discovery. April 2012. 
  • Invited Speaker at the workshop on ‘order restricted inference and
    estimation’, Hasselt University, Diepenbeek, Belgium. Title: Bayesian variable selection for dose-response modelling. December 2011. 
  • Invited Speaker at the workshop on ‘biclustering of microarray data’, Hasselt University, Diepenbeek, Belgium. Title: Order restricted clustering, November. 2010.

Teaching and Supervision

PhD Supervision: 

Dr Farrants Kirstin (October 2012 – December 2015) 

The recommodification of the social determinants of health 

Dr Matheys Kate (November 2013 - November 2016) 

Austerity, inequality and mental health: A case study of Stockton-on-Tees

Mr Ramjee Bhandari (October 2014 – September 2017) 

Geographies of health inequalities in a time of austerity: A case study of Stockton-on-Tees

Mr Eleojo Abubakar (October 2016 – September 2019) 

Modelling socio-spatial variations in the geographic coverage of healthcare for efficient health service planning

Dr Martin Otava (October 2011 – September 2015)

Modelling high dimensional dose-response data 

Dr Nolen Joy Perualila (September 2011 – October 2015)

Integrative methods for the analysis of structure- transcription-assay relationships in drug discovery and early development 

Ms Marijke Van Moerbeke (October 2014 - October 2018)

Differential splicing detection in early drug development experiments 

Mr Ewoud De Troyer (October 2014 - October 2018)

Challenges in integrated data analysis for bioinformatics and big data structures

 

Selected Publications

Authored book

Chapter in book

  • Khamiakova, T., Kasim, A. & Shkedy, Z. (Accepted). ‘Integrative analysis of miRNA and mRNA Data’. In Applied Biclustering Methods for High Dimensional Data Using R.
  • Kasim, A., Hochreiter, S. & Shkedy, Z. (2016). δ-biclustering and FLOC algorithm. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 37-48.
  • Perualila, N.J., Shkedy, Z., Ravindranath, A.C., Drakakis, G., Liggi, S., Bender, A., Kasim, A., QSTAR Consortium, Talloen, W. & Goehlmann, H.W.H. (2016). Biclustering methods in chemoinformatics and molecular modelling. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 175-192.
  • Perualila, N.J., Shkedy, Z., Cabrera, J., Amaratunga, D. & Kasim, A. (2016). Enrichment of gene expression modules. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 203-222.
  • Amaratunga, D., Cabrera, J., Perualila, N.J., Kasim, A. & Shkedy, Z. (2016). From cluster analysis to biclustering. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 11-34.
  • Talloen, W., Goehlmann, H.W.H., Verbist, B., Perualila, N.J., Kasim, A., Shkedy, Z. & and QSTAR Consortium (2016). Gene expression experiments in drug discovery. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 159-174.
  • Perualila, N.J., Shkedy, Z., Sengupta, R., Bigirumurame, T., Bijnens, L., Talloen, W., Verbist, B., Goehlmann, H.W.H., QSTAR Consortium & Kasim, A. (2016). High dimensional biomarkers in drug discovery: The QSTAR Framework. In Applied Surrogate Endpoint Evaluation Methods with SAS and R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press.
  • Kasim, A. & Shkedy, Z. (2016). Iterative signature algorithm. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 119-130.
  • Otava, M., Verheyen R.G., Shkedy, Z., Talloen, W. & Kasim, A. (2016). Pattern discovery in high-dimensional problems. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 277-294.
  • Kasim, A., Pramana, S. & Shkedy, Z. (2016). Spectral biclustering. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 89-98.
  • De Troyer, E., Otava, M., Zhang, J.D., Pramana, S., Khamiakova, T., Kaiser, S., Sill, M., Culhane, A., Gusenleitner, D., Gestraud, P., Csardi, G., Aregay, M., Hochreiter, S., Klambauer, G., Clevert, D.A., Verbeke, T., Perualila, N.J., Kasim, A. & Shkedy, Z. (2016). The biclustGui package. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 321-348.
  • De Troyer, E., Sengupta, S., Otava, M., Zhang, J.D., Kaiser, S., Culhane, A., Gusenleitner, D., Gestraud, P., Csardi, G., Hochreiter, S., Klambauer, G., Clevert, D.A., Perualila, N.J., Kasim, A. & Shkedy, Z. (2016). The biclustGui Shiny App. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 373-384.
  • Shkedy, Z., De Troyer, E., Kasim A., Hochreiter, S. & Turner, H. (2016). The Plaid Model. In Applied Biclustering Methods for High Dimensional Data Using R. Kasim, A., Shkedy, Z., Kaiser, S., Hochreiter, S. & Talloen, W. Boca Raton: CRC Press. 73-88.
  • Kasim, A, Van Sanden, S, Otava, M, Hochreirter, S, Clevert, DA, Talloen, W & Lin, D (2012). δ-biclustering of Monotone Profiles. In Modelling Dose-Response Microarray Data in Early Drug Development Experiments using R. Lin, D., Shkedy, Z., Yekutieli, D., Amaratunga, D. & Bijnens, L Springer. 135-149.
  • Kasim, A, Shkedy, Z & Kato, B (2012). Estimation and inference under simple order restrictions: Hierarchical Bayesian Approach. In Modeling Dose-response Microarray Data in Early Drug Development Experiments Using R. Lin, D., Shkedy, Z., Yekutieli, D., Amaratunga, D. & Bijnens, L. Springer. 193-213.

Conference Paper

  • Kasim A., Skhedy Z., Lin D., Van Sanden S., Cortinas J., Gohlmann H.W., Bijnens L., Yekutieli D., Camilleri M., Aerssens J. & Talloen W. (2010), Translating Gene Signatures Across Tissues: A Statistical View, in Arabnia, Hamid R. & Tran, Quoc-Nam. eds, 1: WORLDCOMP'10: The 2010 International Conference on Bioinformatics and Computational Biology. Las Vegas, CSREA Press, Las Vegas, 298-301.

Journal Article

Report

  • Husain, F., Jabin, N., Haywood, S., Kasim, A. & Paylor, J. (2016). Parent Academy: Evaluation report and executive summary.
  • Merrell, C. & Kasim A. (2015). Butterfly Phonics: Evaluation report and executive summary.
  • King, B. & Kasim, A. (2015). Rapid Phonics.

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