WinBUGS and Bayesian tools for Archaeology

There are 50 or more published papers describing the application of Bayesian statistics to archaeology (see Mike Baxter's bibliography for an exhaustive list).  The majority of the techniques described are not readily available to the archaeological community at large because of the problem of implementing them in suitable software.  The exception is, of course, many of the methods applied to radiocarbon dating, which are implemented in BCal, and OxCal.  This webpage aims to help fill the gap by supplying code for WinBUGS implementations of archaeological problems.

WinBUGS is freely available software for the constructing Bayesian statistical models and evaluating them using Markov-Chain Monte-Carlo (MCMC) methods.  Details are provided on the BUGS Project web pages.  WinBUGS provides an ideal platform for implementing many of the Bayesian methods for archaeology.  If you are an archaeologist who can write simple programs and understand the mathematics of the papers, and are prepared to learn enough about MCMC to check that the output is reliable, then this is for you.  If you are a statisticaian looking for interesting problems then this is also for you.

To use the models supplied here you will need to download and install WinBUGS, and read the manual and some of the references in it to comprehend MCMC methods.  For a general introduction to MCMC I would recommend Gilks WR, Richardson S & Spiegelhalter DJ (Eds.) (1996) Markov chain Monte Carlo in Practice Chapman & Hall, London. For a very wide ranging discussion of Bayesian modelling with worked examples in WinBUGS see Congdon P (2001) Bayesian Statistical Modelling. Wiley, Chichester.

Most of the files are worked examples from the literature.  I would be grateful for any comments or suggestions to improve the models given here. Contributions of new models are also welcome.

Download the files by right clicking and selecting your browser's download or equivalent option.


 

Andrew Millard

Links to:

List of models by publication List of models by topic

List of models by publication

Buck, C.E., Cavanagh, W.G. and Litton, C.D. 1996: Bayesian Approach to Interpreting Archaeological Data. Chichester: Wiley.
    Section 7.3 Simple disease incidence
    Section 7.4 Consumerland revisited
    Section 9.2 Simple radiocarbon calibration
    Section 9.4 Radiocarbon calibration - Case Study I -  St Veit-Klinglberg, Austria - stratification
    Section 9.5 Radiocarbon calibration - Case Study II - Jama River Valley Ecuador
    Section 9.6 Radiocarbon calibration - Case Study III - Stolford, England - wiggle matching
    Section 9.7 Radiocarbon calibration - Case Study IV - Kastanas, Greece - wiggle matching
    Section 9.8 Radiocarbon calibration - Case Study V - The Chancay culture of Peru

Buck, C.E., Litton, C.D. and Stephens, D.A. 1993: Detecting a change in the shape of a prehistoric corbelled tomb. Statistician 42 483-490.
    Corbels.odc

Buck, C.E., Litton, C.D. and Shennan, S.J. 1994: A case study in combining radiocarbon and archaeological information: the early Bronze-Age settlement of St. Veit-Klinglberg, Land Salzburg, Austria. Germania 2 427-447.
    St Veit-Klinglberg

Christen, J.A., Clymo, R.S. and Litton, C.D. 1995: A Bayesian approach to the use of 14C dates in the estimation of the age of peat. Radiocarbon 37 431-442.
    peat.odc

Christen, J.A. and Litton, C.D. 1995: A Bayesian approach to wiggle-matching. Journal of Archaeological Science 22 719-725.
    Stolford Log  - tree-ring wiggle matching
    Kastanas, Greece - archaeological wiggle matching

Christen JA & Nicholls G (2000) Random walk radiocarbon calibration. Technical Report #457, Mathematics Department, University of Auckland, New Zealand.
    available as a gzipped postscript file from Geoff Nicholls' website.
    Christen-Nicholls.odc

Zeidler, J.A., Buck, C.E. and Litton, C.D. 1998: The integration of archaeological phase information and radiocarbon results from the Jama River Valley, Ecuador: a Bayesian approach. Latin American Antiquity 9 160-179.
    Jama River Valley


List of models by topic (coming sometime).

Dating

Survey data / Image analysis

Miscellaneous

   Corbelled tomb changepoint
 

Provenancing

 

 


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This page created 25 September 2001. Last updated 06 July 2004

© Andrew Millard 2003